"Web Based help Ask Permission - asks permission before opening a web browser to get help from the internet"
These RMB commands have been updated with the longest button command known to exist in trueSpace history with your Modal Question script.
"Mesh Object Coordinate Mode switches to world coordinate mode in the updates, instead of between the 2 object coordinate modes."
Restored to you original script.
My feeble attempt was to enable Object coordinate Mode so it worked automatically.
The switching back to World coordinate Mode was my intent to overcome the issue with Tangent coordinate Mode.
"FK Controls has a small dense UI in the Updates that's difficult to read. Better for me to be too big than too small."
Redesigned with bigger buttons.
My intent here was to add the auto popup panel making it easier to use when in use.
I do try to make the panels smaller, when they are floating, only to save space.
"Deformers don't have the new control widgets"
It's been awhile since testing your original verses the widget version.
As I recall, the widget version was incomplete and animating was harder.
The original version still has some value, especially with animation.
My thought was a user could easily overwrite the original by installing the widget version.
"Quad Menu for modeling in the updates has a different layout than the Quad Toolbar which also has a button to receive a user selected shortcut key"
Originally, your first version, I thought you liked the Spacebar as the shortcut.
I have not updated to your newest version and my thought was there could be two flavors. Personally I like the offset aspect so that it does not get in the way of the Point Edit selection.
"Mesh Origin tool doesn't have a button, only a shortcut in the object Nav widget"
I did not include a button because this is not compatible with the other widgets. As I understand it anyway.
"Ctrl button for the link editor only works if the main link editor window is available"
The Ctrl button for the Link Editor is unique to the Link Editor aspect toolbar.
Currently when opening a new Link Editor, the Link Editor aspect toolbar does not exist.
Maybe it would be possible to exchange the RMB= Unselect with calling your script?
"View 3D Layout doesn't work the same way or have the same options"
Quad Window is not your View 3D Layout scripts, it is entirely different. Currently the updates do not include your View 3D Layout scripts